
About Euphorbiaceae Database V2.0!

Euphorbiaceae, the seventh largest family of angiosperms, has attracted much attention as an energy plant, with 218 genera and about 6,745 species. We have developed Euphorbiaceae comprehensive genomics database V2.0 (EupDB V2.0), which provides a valuable resource and an important platform for basic and applied research on Euphorbiaceae plants.
The database integrates 20 genomes of 13 species (Euphorbia lathyris, Hevea brasiliensis, Jatropha curcas, Manihot esculenta, Vernicia montana, Triadica sebifera, Speranskia yunnanensis, Mercurialis annua, Euphorbia tirucalli, Euphorbia peplus, Excoecaria agallocha, Ricinus communis and Vernicia fordii), and collects 1004 paired-end RNA-seq (including different tissues and stress treatment conditions), 708 miRNA sequences, and 19 Euphorbiaceae hot pathway maps.
EupDB V2.0 provides some common genomics analysis and search tools for user, including BLAST, Jbrowse, GO/KEGG enrichment, expression heat map, miRNA target prediction, variant information related key agronomic traits, LDheatmap, syntenic gene and structure, orthologous groups, PPI network,Primer design and pathway map,Primer design, etc.
See Tutorial and Case Study page for more help.
Quick Tools
Find differentially expressed genes
Search for lncRNAs in genomic regions
Find DNA methylation positon
Find protein interaction
Search SSR Marker
Find related agricultural traits
Identifying homologous blocks genome-wide
Search homologous sequences
Lastest News
- Euphorbiaceae Database v1.0 is online. 08/09/2022
- Euphorbiaceae Database v2.0 is online. 11/12/2024
Citation
Liu, J., Li, Y., Li, J., Chen, W., Pan, B., Liu, A., Xu, Z. F., Xu, W., & Liu, C. (2024). EupDB: An integrative and comprehensive functional genomics data hub for Euphorbiaceae plants. Plant communications, 5(1), 100683. https://doi.org/10.1016/j.xplc.2023.100683